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| ===== Getting started ===== | ===== Getting started ===== |
| | [[https://www.jove.com/video/56245/expedited-radiation-biodosimetry-automated-dicentric-chromosome | Video overview of ADCI published in the Journal of Visualized Experiments]]\\ |
| | [[main:demoversion | demonstration version]]\\ |
| [[main:installation | installation]]\\ | [[main:installation | installation]]\\ |
| [[main:quickstart | quick start]]\\ | [[main:quickstart | quick start]]\\ |
| [[main:maingui | main GUI]]\\ | [[main:maingui | main GUI]]\\ |
| [[main:console | console]]\\ | [[main:console | console]]\\ |
| [[main:plots | plots]]\\ | [[main:plots | plots]] |
| [[main:qualitycontrol | quality control]] | |
| |
| ===== Samples ===== | ===== Samples ===== |
| [[main:imageselectionmodel | image selection model]]\\ | [[main:imageselectionmodel | image selection model]]\\ |
| [[main:presetimgselectionmodels | preset image selection models]]\\ | [[main:presetimgselectionmodels | preset image selection models]]\\ |
| | [[main:selectionmodelsearch | automated search for optimal image selection models]]\\ |
| [[main:processqueue | process queue]]\\ | [[main:processqueue | process queue]]\\ |
| | [[main:gpuacceleration | process samples with GPU]]\\ |
| [[main:metaphaseimgviewer | metaphase image viewer]]\\ | [[main:metaphaseimgviewer | metaphase image viewer]]\\ |
| [[main:svmsigma | SVM sigma value]]\\ | [[main:svmsigma | SVM sigma value]]\\ |
| [[main:fpfilters | false positive filters]]\\ | [[main:fpfilters | false positive filters]]\\ |
| [[main:groupbinmethod | group bin method]]\\ | [[main:groupbinmethod | group bin method]]\\ |
| [[main:processtime | time required to process samples]] | [[main:qualitycontrol | quality control]]\\ |
| | [[main:processtime | time required to process samples]]\\ |
| | [[main:samplepackunpack | transfer sample to another computer (pack/unpack sample)]]\\ |
| | [[main:combinesamples | combine processed samples]] |
| |
| ===== Estimate dose ===== | ===== Estimate dose ===== |
| [[main:curvecalibrationwizard | curve calibration wizard]]\\ | [[main:curvecalibrationwizard | curve calibration wizard]]\\ |
| [[http://adciwiki.cytognomix.com/files/resources/guide_to_manually_derived_calibration_curves.pdf | guide to create manually derived calibration curves (pdf)]]\\ | |
| [[main:doseestimationwizard | dose estimation wizard]]\\ | [[main:doseestimationwizard | dose estimation wizard]]\\ |
| [[main:calibrationcurve | calibration curve]]\\ | [[main:calibrationcurve | calibration curve]]\\ |
| [[main:estimatedose | estimate dose]] | [[main:estimatedose | estimate dose]]\\ |
| | [[main:partialbodyestimatedose | partial-body dose estimation]]\\ |
| | [[http://adciwiki.cytognomix.com/files/resources/guide_to_manually_derived_calibration_curves.pdf | guide to create manually derived calibration curves (pdf)]] |
| |
| ===== Reports ===== | ===== Reports ===== |
| [[main:curvereport | calibration curve report]]\\ | [[main:curvereport | calibration curve report]]\\ |
| [[main:dosereport | dose estimation report]]\\ | [[main:dosereport | dose estimation report]]\\ |
| [[main:csvdosereport | provider report (dose estimation - csv format)]] | [[main:csvdosereport | provider report (dose estimation - csv format)]]\\ |
| | [[main:optimalselectionsearchreport | optimal image selection model search report]] |
| |
| ===== Execution history ===== | ===== Execution history ===== |
| |
| ===== Other ===== | ===== Other ===== |
| | [[http://adciwiki.cytognomix.com/files/resources/ADCI_ShortcutDocument.pdf | Shortcut Document - Overview of ADCI software icons and main concepts (pdf)]]\\ |
| | [[main:settingsandprefs | settings and preferences]]\\ |
| | [[main:faqandtips | FAQ, useful tips and tricks]]\\ |
| [[main:references | ADCI and underlying algorithm references]]\\ | [[main:references | ADCI and underlying algorithm references]]\\ |
| [[main:abbreviations | abbreviations]]\\ | [[main:abbreviations | abbreviations]]\\ |
| [[main:contactus | contact us]] | [[main:contactus | contact us]] |
| |
| | ===== ADCI-BGQ (in progress) ===== |
| | [[main:bgqgetstarted | Get started]]\\ |
| | [[main:bgqworkflow | Overall workflow]]\\ |
| | [[main:bgqmaingui | Main GUI]]\\ |
| | [[main:bgqcreateasampleforaperson | Create a sample for a person]]\\ |
| | [[main:bgqcreateasampleset | Create a sample set]]\\ |
| | [[main:bgqcreateascenario | Create a scenario]]\\ |
| | [[main:bgqeditdescriptions | Edit descriptions of a scenario, sample sets and samples]]\\ |
| | [[main:bgqprocessasampleset | Process a sample set]]\\ |
| | [[main:bgqdisplaysamplelocationsanddosesofasampleset | Display sample locations and doses of a scenario on a map]]\\ |
| | [[main:bgqperformkrigingonasampleset | Perform Kriging on a scenario]]\\ |
| | [[main:bgqcomparekriging | Compare a Kriging result with a previous one]]\\ |
| | [[main:bgqdensifyakrigingresultofasampleset | Densify a Kriging result]]\\ |
