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main:bgqcreateasampleforaperson [2018/11/23 21:33] rlu45 |
main:bgqcreateasampleforaperson [2021/02/09 16:28] bshirley removed |
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- | First, you need to upload the metaphase images of the person to the BGQ server, which can be accomplished by the bottom area of the right panel. In this area, the left part displays the contents on the disk drives of the local computer you are using; the right part displays the contents in your account on the BGQ server. In the left part, select the metaphase images or the directory containing them; in the right part, select the destination directory on the BGQ server. Then click the ‘Upload’ button in the middle. If the upload takes some time, a progress dialog will pop up. It displays the current uploading percentage in a progress bar and the name of the file being uploaded. | + | <WRAP group> |
- | In the right part, you can also create a new directory, rename | + | <WRAP half column> |
+ | First, you need to upload the metaphase images of the person to the BGQ server, which can be accomplished by the bottom area of the right panel. In this area, the left part displays the contents on the disk drives of the local computer you are using; the right part displays the contents in your account on the BGQ server. In the left part, select the metaphase images or the directory containing them; in the right part, select the destination directory on the BGQ server. The default, recommended destination directory is ' | ||
+ | </ | ||
+ | <WRAP half column> | ||
+ | {{ file: | ||
+ | </ | ||
+ | </ | ||
+ | In the right part, you can also create a new directory, rename and delete a directory/ | ||
- | After uploading the metaphase images, you can create samples | + | After uploading the metaphase images, you can create samples |
- | Then the paths of all selected directories will be displayed in the drop-down list. For the source directory currently being displayed | + | {{ file: |
+ | |||
+ | Then the paths of all selected directories will be displayed in the drop-down list. For the source directory currently being selected | ||
* ‘Name’ text field: the name of the newly created sample. It is prepopulated with the name of the directory. | * ‘Name’ text field: the name of the newly created sample. It is prepopulated with the name of the directory. | ||
* ‘Description’ text area: providing a number of description entries for the sample. It is prepopulated with common entries, including ‘Coordinate of the person’ and ‘Exposed physical dose’. You can add or remove any description entry. | * ‘Description’ text area: providing a number of description entries for the sample. It is prepopulated with common entries, including ‘Coordinate of the person’ and ‘Exposed physical dose’. You can add or remove any description entry. | ||
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You can select another directory in the drop-down list, then the ‘Name’ text field, ‘Description’ text area and ‘Metaphase images included’ list will be updated accordingly. After you finish editing ‘Name’ or ‘Description’ for one sample, its content will be automatically saved. You can also click the ‘Clear’ button to clear the contents in all of the components. Each sample must have a name, but may not have any description. | You can select another directory in the drop-down list, then the ‘Name’ text field, ‘Description’ text area and ‘Metaphase images included’ list will be updated accordingly. After you finish editing ‘Name’ or ‘Description’ for one sample, its content will be automatically saved. You can also click the ‘Clear’ button to clear the contents in all of the components. Each sample must have a name, but may not have any description. | ||
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+ | Then select a destination directory into which the created samples will be put by clicking the ' | ||
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+ | {{ file: | ||
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+ | ===== Download metaphase images from an external computer ===== | ||
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+ | <WRAP group> | ||
+ | <WRAP half column> | ||
+ | It is very likely that metaphase images are produced by microscope devices of a remote laboratory, thus initially stored on a remote computer of the laboratory. In this case, the images need to be first downloaded to the local computer that you are using, which can also be accomplished by the bottom area of the right panel. In the drop-down list in the right part of the panel, select the item ' | ||
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+ | The following figure shows that after successfully connecting to the remote computer, its name will be filled into the drop-down list and selected. For privacy, the right tree will only show the contents in one directory on the remote computer, which is the ' | ||
+ | </ | ||
+ | <WRAP half column> | ||
+ | {{ file: | ||
+ | </ | ||
+ | </ | ||
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+ | {{ file: | ||
===== Monitor progress ===== | ===== Monitor progress ===== |