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main:bgqprocessasampleset [2018/10/29 20:21] rlu45 |
main:bgqprocessasampleset [2019/01/09 21:05] rlu45 |
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====== Process a sample set ====== | ====== Process a sample set ====== | ||
- | After creating | + | To process |
===== Prepare ===== | ===== Prepare ===== | ||
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{{ file: | {{ file: | ||
- | First, you need to set the value of the parameter ‘Number of blocks’, which is required | + | First, you need to upload |
- | Upon selection | + | <WRAP group> |
+ | <WRAP half column> | ||
+ | Then you need to set the value of the parameter ‘Number of blocks’, which is required by submission of one BGQ job. The recommended value is the prepopulated ' | ||
+ | |||
+ | The selected curve files will be filled into the drop-down list, and the image selection model associated with the curve currently being selected in the drop-down list will be displayed in the ‘Image selection model’ text field. | ||
+ | </ | ||
+ | <WRAP half column> | ||
+ | {{ file: | ||
+ | </ | ||
+ | </ | ||
+ | |||
+ | {{ file: | ||
===== Monitor progress ===== | ===== Monitor progress ===== | ||
- | After setting | + | After providing |
- | In this dialog, the top grouping box displays the detailed progress information for the particular job currently being selected in the drop-down list, with the progress bar graphically showing the percentage progress of this job. | + | <WRAP group> |
- | * ‘Status’ label: the current status of the job, among three possible | + | <WRAP half column> |
- | ‘Elapsed time’ label: how long the job has been running for. | + | In this monitoring |
+ | * ‘Status’ label: the current status of the job, among three possible | ||
+ | | ||
* ‘Completed samples’ label: the number of completed samples in this job to date/the total number of samples in this job. | * ‘Completed samples’ label: the number of completed samples in this job to date/the total number of samples in this job. | ||
* ‘Completed images’ label: the number of completed metaphase images in this job to date/the total number of images in this job (i.e. the sum of image counts in all samples in this job). | * ‘Completed images’ label: the number of completed metaphase images in this job to date/the total number of images in this job (i.e. the sum of image counts in all samples in this job). | ||
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* ‘Job count, Queued, Running, Finished’ labels: the total number of jobs submitted and the number of jobs in each status. | * ‘Job count, Queued, Running, Finished’ labels: the total number of jobs submitted and the number of jobs in each status. | ||
* ‘Used blocks’ label: the number of blocks in the BGQ supercomputer currently being used by ADCI-BGQ. | * ‘Used blocks’ label: the number of blocks in the BGQ supercomputer currently being used by ADCI-BGQ. | ||
+ | </ | ||
+ | <WRAP half column> | ||
+ | {{ file: | ||
+ | </ | ||
+ | </ | ||
+ | |||
+ | {{ file: | ||
+ | |||
+ | <WRAP group> | ||
+ | <WRAP half column> | ||
* ‘Total elapsed time’ label: how long all jobs have been running for since the first one started running. | * ‘Total elapsed time’ label: how long all jobs have been running for since the first one started running. | ||
* ‘Total completed samples’ label: the number of completed samples in all jobs to date / the number of samples in this sample set. | * ‘Total completed samples’ label: the number of completed samples in all jobs to date / the number of samples in this sample set. | ||
* ‘Total completed images’ label: the number of completed samples in all jobs to date / the number of images in this sample set. | * ‘Total completed images’ label: the number of completed samples in all jobs to date / the number of images in this sample set. | ||
+ | The text area displays a feedback message when each job terminates and a summary message after all jobs terminate. At the bottom of this dialog, four buttons provide the following functionalities: | ||
+ | * ‘Show/ | ||
+ | * ‘Save clock time’ button: becomes clickable after all jobs terminate. Click it to save the clock time of all jobs running to a .csv file. | ||
+ | * ‘Cancel’ button: Click it to cancel all jobs. Results of completed samples will remain, running jobs will be killed and queued jobs will not get run. | ||
+ | </ | ||
+ | <WRAP half column> | ||
+ | {{ file: | ||
+ | </ | ||
+ | </ | ||
+ | ===== Download result matrices of samples in a processed sample set ===== | ||
+ | After finishing processing a sample set, you can download the result matrices of the contained samples to your local computer, then you can open them and perform further processing in the desktop ADCI software (e.g. estimating doses using additional calibration curves). To do this, first click the processed sample set in the scenario tree, then click the ' |