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To process a sample set and perform dose estimation, select it in the left tree and click the ‘Process sample set’ menu item under the ‘Run’ menu. The sample set can either belong to a scenario or be isolated.
First, you need to upload the calibration curves and image selection models that will be used for dose estimation on the sample set from your local computer to the server, which can be accomplished by the bottom area of the right panel. In the bottom area, the left tree shows the contents on the computer you are using; the right tree shows the contents in your BGQ account. In the left tree, locate and select the calibration curves and image selection models; in the right tree, select a destination directory to which the files will be uploaded, then click the middle 'Upload' button. The recommended destination directory 'CalibrationCurves' is selected and expanded by default.
First, you need to set the value of the parameter ‘Number of blocks’, which is required by submission of one BGQ job. The recommended value is the prepopulated 1. Optionally, you can also choose to simultaneously estimate radiation doses that the samples were exposed to while processing the sample set, by selecting a calibration curve on the BGQ server with the ‘Select’ button.
Upon selection of a curve, the image selection model associated with the curve will be automatically displayed in the ‘Image selection model’ text field. You can also use the ‘Change’ button to change the model that is associated with the curve. Use the bottom area of the right panel to first upload the curves and models.
After setting these information, click the ‘Run’ button to submit jobs and start the processing of the sample set. A progress dialog will appear.
In this dialog, the top grouping box displays the detailed progress information for the particular job currently being selected in the drop-down list, with the progress bar graphically showing the percentage progress of this job.
The middle grouping box displays the overall progress information for all jobs, with the progress bar graphically showing the percentage progress of all jobs.
The text area displays a feedback message when each job terminates and a summary message after all jobs terminate. At the bottom of this dialog, four buttons provide the following functionalities: