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main:imageselectionmodel [2017/08/04 13:58]
bshirley
main:imageselectionmodel [2017/11/09 18:44] (current)
yli [Contents of an image selection model]
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   * **Obj - Exclude if object count is < [value] or > [value]**\\ The number of total objects found in an image, excluding noises and nuclei. Ideally, it would be 46. This filter excludes images with too few or too many chromosomes.   * **Obj - Exclude if object count is < [value] or > [value]**\\ The number of total objects found in an image, excluding noises and nuclei. Ideally, it would be 46. This filter excludes images with too few or too many chromosomes.
   * **Seg - Exclude if segmented count < [value] or > [value]**\\ The number of objects processed by GVF algorithm in an image. Segmented objects (processed by GVF) are subset of total objects. Ideally, it would also be 46. This filter is similar to object count filter, but more stringent. ​   * **Seg - Exclude if segmented count < [value] or > [value]**\\ The number of objects processed by GVF algorithm in an image. Segmented objects (processed by GVF) are subset of total objects. Ideally, it would also be 46. This filter is similar to object count filter, but more stringent. ​
-  * **Ratio - Exclude if classified object ratio [value]**\\ The ratio of objects recognized as chromosomes and segmented objects. Classified objects (recognized as chromosomes) are subset of segmented objects. This filter excludes images in which chromosomes are not recognized effectively.+  * **Ratio - Exclude if classified object ratio [value]**\\ The ratio of objects recognized as chromosomes and segmented objects. Classified objects (recognized as chromosomes) are subset of segmented objects. This filter excludes images in which chromosomes are not recognized effectively.
   * **Score - Image ranking and inclusion method**\\ We recommend the minimum number of images remaining after image selection to be greater than 200-250 images.((Liu J, Li Y, Wilkins R, Flegal F, Knoll JHM, Rogan PK. Accurate Cytogenetic Biodosimetry Through Automation Of Dicentric Chromosome Curation And Metaphase Cell Selection. bioRxiv 120410; doi: 10.1101/​120410.​)) ​   * **Score - Image ranking and inclusion method**\\ We recommend the minimum number of images remaining after image selection to be greater than 200-250 images.((Liu J, Li Y, Wilkins R, Flegal F, Knoll JHM, Rogan PK. Accurate Cytogenetic Biodosimetry Through Automation Of Dicentric Chromosome Curation And Metaphase Cell Selection. bioRxiv 120410; doi: 10.1101/​120410.​)) ​
     * **None**: ADCI uses no image ranking and inclusion.     * **None**: ADCI uses no image ranking and inclusion.
main/imageselectionmodel.txt · Last modified: 2017/11/09 18:44 by yli