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main:plots [2017/04/07 15:43] 127.0.0.1 external edit |
main:plots [2018/02/08 16:25] (current) bshirley |
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====== Plots ====== | ====== Plots ====== | ||
- | A variety of plots are available in ADCI software. [[main: | + | A variety of plots are available in ADCI software. [[main: |
- | ===== Show distribution | + | ===== Zoom and pan functionality ===== |
+ | **Feature present since ADCI version 1.9** | ||
+ | <WRAP group> | ||
+ | <WRAP column half> | ||
+ | === Zoom === | ||
+ | Zoom in and out using the mouse wheel. Note the zoom functionality zooms in on both the x and y axis. Plot axes are rescaled as necessarily while zooming. The default level of zoom ensures all data points are contained within the visible area (viewport). After zooming, please note some datapoints may be present outside the field of view. For example, the two screenshots to the right of this text depict default zoom (upper screenshot) and increased zoom (lower screenshot). The leftmost bar in the lower screenshot extends beyond the top of the plot viewport. | ||
+ | |||
+ | === Pan === | ||
+ | The plot viewport can be moved without altering the zoom level in a "drag and drop" manner by holding down the mouse button and moving the mouse. When the mouse button is held down, moving the mouse in any direction will move the viewport. When attempting to click and hold the mouse button to begin panning, ensure the cursor is within the boundaries of the plot. Attempting to pan while the cursor is outside of the plot viewport will cause the window itself to be moved instead. If this occurs it may cause the plot area to "pop out" of the main ADCI window and become a separate window. It can be reattached by simply dragging the plot area back into position in the main ADCI window. | ||
+ | |||
+ | === Rescale to default position === | ||
+ | Click the " | ||
+ | |||
+ | </ | ||
+ | <WRAP column half> | ||
+ | {{file: | ||
+ | {{file: | ||
+ | </ | ||
+ | </ | ||
+ | |||
+ | |||
+ | ===== Plot types ===== | ||
+ | |||
+ | ==== Calibration curve ==== | ||
+ | <WRAP group> | ||
+ | <WRAP column half> | ||
+ | __Plot generation__\\ Highlight a [[main: | ||
+ | |||
+ | __Plot description__\\ | ||
+ | * **x-axis**\\ Radiation exposure in gray (Gy) | ||
+ | * **y-axis**\\ Number of DCs per image | ||
+ | |||
+ | The curved line represents the value (in Gy) which will be assigned to a [[main: | ||
+ | |||
+ | </ | ||
+ | <WRAP column half> | ||
+ | {{file: | ||
+ | </ | ||
+ | </ | ||
+ | |||
+ | ==== Dose estimation ==== | ||
+ | <WRAP group> | ||
+ | <WRAP column half> | ||
+ | __Plot generation__\\ This plot will appear when the [[main: | ||
+ | |||
+ | __Plot description__\\ | ||
+ | * **x-axis**\\ Radiation exposure in gray (Gy) | ||
+ | * **y-axis**\\ Dicentric chromosomes per metaphase images | ||
+ | * **dotted lines**\\ Each dotted line represents a DC frequency input in the Dose Calculator. | ||
+ | |||
+ | Each DC frequency (dotted line) is colored differently. To determine which DC frequency a dotted line corresponds to, consult the output appearing in the [[main: | ||
+ | |||
+ | </ | ||
+ | <WRAP column half> | ||
+ | {{file: | ||
+ | </ | ||
+ | </ | ||
+ | |||
+ | ==== Distribution | ||
<WRAP group> | <WRAP group> | ||
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Green bars represent the frequency at which DCs appear in metaphase images in the sample. In this example, ~26% of images in the sample contain 1 DC. The Red dashed line represents the theoretical Poisson distribution (probability of a number of independent events occurring in a fixed time interval). | Green bars represent the frequency at which DCs appear in metaphase images in the sample. In this example, ~26% of images in the sample contain 1 DC. The Red dashed line represents the theoretical Poisson distribution (probability of a number of independent events occurring in a fixed time interval). | ||
- | The dicentric cell distribution under full body X or gamma ray radiation | + | The dicentric cell distribution under full body X or gamma ray radiation |
+ | |||
+ | Dicentric cell distribution will have only one bin for cells with no DC and the p-value will be ' | ||
</ | </ | ||
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</ | </ | ||
- | ===== Show distribution | + | ==== Distribution |
Highlight a single sample and click the {{file: | Highlight a single sample and click the {{file: | ||
- | === Number of objects === | + | ==== Number of objects |
<WRAP group> | <WRAP group> | ||
<WRAP column half> | <WRAP column half> | ||
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</ | </ | ||
- | === Mean chromosome length/ | + | ==== Mean chromosome length/ |
<WRAP group> | <WRAP group> | ||
<WRAP column half> | <WRAP column half> | ||
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</ | </ | ||
- | === Mean candidate density === | + | ==== Mean candidate density |
<WRAP group> | <WRAP group> | ||
<WRAP column half> | <WRAP column half> | ||
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</ | </ | ||
- | === Mean Chromosome finite difference === | + | ==== Mean Chromosome finite difference |
<WRAP group> | <WRAP group> | ||
<WRAP column half> | <WRAP column half> | ||
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</ | </ | ||
- | === Number of segmented objects === | + | ==== Number of segmented objects |
<WRAP group> | <WRAP group> | ||
<WRAP column half> | <WRAP column half> | ||
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</ | </ | ||
- | === Classified object/ | + | ==== Classified object/ |
<WRAP group> | <WRAP group> | ||
<WRAP column half> | <WRAP column half> | ||
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</ | </ | ||
- | === Group bin distance === | + | ==== Group bin distance |
<WRAP group> | <WRAP group> | ||
<WRAP column half> | <WRAP column half> | ||
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</ | </ | ||
- | ===== Plot calibration curve ===== | ||
- | <WRAP group> | ||
- | <WRAP column half> | ||
- | __Plot generation__\\ Highlight a [[main: | ||
- | |||
- | __Plot description__\\ | ||
- | * **x-axis**\\ Radiation exposure in gray (Gy) | ||
- | * **y-axis**\\ Number of DCs per image | ||
- | |||
- | The curved line represents the value (in Gy) which will be assigned to a [[main: | ||
- | |||
- | </ | ||
- | <WRAP column half> | ||
- | {{file: | ||
- | </ | ||
- | </ | ||
- | |||
- | ===== Dose estimation ===== | ||
- | <WRAP group> | ||
- | <WRAP column half> | ||
- | __Plot generation__\\ This plot will appear when the [[main: | ||
- | |||
- | __Plot description__\\ | ||
- | * **x-axis**\\ Radiation exposure in gray (Gy) | ||
- | * **y-axis**\\ Dicentric chromosomes per metaphase images | ||
- | * **dotted lines**\\ Each dotted line represents a DC frequency input in the Dose Calculator. | ||
- | |||
- | Each DC frequency (dotted line) is colored differently. To determine which DC frequency a dotted line corresponds to, consult the output appearing in the [[main: | ||
- | |||
- | </ | ||
- | <WRAP column half> | ||
- | {{file: | ||
- | </ | ||
- | </ |