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main:plots [2018/01/26 16:59]
bshirley
main:plots [2018/02/08 16:25] (current)
bshirley
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 === Pan === === Pan ===
-If the viewport has been zoomed in, the viewport can be shifted around without altering the zoom level in a "drag and drop" manner by holding down the mouse button and moving the mouse. When the mouse button is held down, moving the mouse in any direction will move the plot viewport. When attempting to click and hold the mouse button to begin panning, ensure the cursor is within the boundaries of the plot. Attempting to pan while the cursor is outside of the plot viewport will cause the window itself to be moved instead. If this occurs it may cause the plot area to "pop out" of the main ADCI window and become a separate window. It can be reattached by simply dragging the plot area back into position in the main ADCI window.+The plot viewport can be moved without altering the zoom level in a "drag and drop" manner by holding down the mouse button and moving the mouse. When the mouse button is held down, moving the mouse in any direction will move the viewport. When attempting to click and hold the mouse button to begin panning, ensure the cursor is within the boundaries of the plot. Attempting to pan while the cursor is outside of the plot viewport will cause the window itself to be moved instead. If this occurs it may cause the plot area to "pop out" of the main ADCI window and become a separate window. It can be reattached by simply dragging the plot area back into position in the main ADCI window.
  
 === Rescale to default position === === Rescale to default position ===
Line 24: Line 24:
  
 ===== Plot types ===== ===== Plot types =====
 +
 +==== Calibration curve ====
 +<WRAP group>
 +<WRAP column half>
 +__Plot generation__\\ Highlight a [[main:calibrationcurve | calibration curve]] within the [[main:mainGUI | main GUI]] and click the {{file:icon:drawing.png?nolink&20}} icon. Multiple curves can be plotted simultaneously. A color can be assigned to a curve by highlighting the appropriate curve, selecting a color from the color dropdown list in the Curves section within the [[main:mainGUI | main GUI]], and clicking the {{file:icon:drawing.png?nolink&20}} icon.
 +
 +__Plot description__\\ 
 +  * **x-axis**\\ Radiation exposure in gray (Gy)
 +  * **y-axis**\\ Number of DCs per image
 +
 +The curved line represents the value (in Gy) which will be assigned to a [[main:sample | sample]] during [[main:estimatedose | dose estimation]] based on its calculated DC frequency. A diamond (♦) symbol is present for each calibration sample, based on calculated DC frequency and the physical dose input during calibration curve creation. If curve confidence intervals are shown (see the [[main:calibrationcurve | calibration curve]] page for more details), upper and lower 95% confidence intervals appear as dashed lines above and below the curve.
 +
 +</WRAP>
 +<WRAP column half>
 +{{file:plot:CalibrationCurve.png?nolink}}
 +</WRAP>
 +</WRAP>
 +
 +==== Dose estimation ====
 +<WRAP group>
 +<WRAP column half>
 +__Plot generation__\\ This plot will appear when the [[main:estimatedose | dose estimation]] process is complete. 
 +
 +__Plot description__\\ 
 +  * **x-axis**\\ Radiation exposure in gray (Gy)
 +  * **y-axis**\\ Dicentric chromosomes per metaphase images
 +  * **dotted lines**\\ Each dotted line represents a DC frequency input in the Dose Calculator.
 +
 +Each DC frequency (dotted line) is colored differently. To determine which DC frequency a dotted line corresponds to, consult the output appearing in the [[main:console | console]]. 
 +
 +</WRAP>
 +<WRAP column half>
 +{{file:plot:DoseEstimation.png?nolink}}
 +</WRAP>
 +</WRAP>
  
 ==== Distribution of detected DCs in Sample ==== ==== Distribution of detected DCs in Sample ====
Line 167: Line 202:
 </WRAP> </WRAP>
  
-==== Calibration curve ==== 
-<WRAP group> 
-<WRAP column half> 
-__Plot generation__\\ Highlight a [[main:calibrationcurve | calibration curve]] within the [[main:mainGUI | main GUI]] and click the {{file:icon:drawing.png?nolink&20}} icon. Multiple curves can be plotted simultaneously. A color can be assigned to a curve by highlighting the appropriate curve, selecting a color from the color dropdown list in the Curves section within the [[main:mainGUI | main GUI]], and clicking the {{file:icon:drawing.png?nolink&20}} icon. 
- 
-__Plot description__\\  
-  * **x-axis**\\ Radiation exposure in gray (Gy) 
-  * **y-axis**\\ Number of DCs per image 
- 
-The curved line represents the value (in Gy) which will be assigned to a [[main:sample | sample]] during [[main:estimatedose | dose estimation]] based on its calculated DC frequency. A diamond (♦) symbol is present for each calibration sample, based on calculated DC frequency and the physical dose input during calibration curve creation. If curve confidence intervals are shown (see the [[main:calibrationcurve | calibration curve]] page for more details), upper and lower 95% confidence intervals appear as dashed lines above and below the curve. 
- 
-</WRAP> 
-<WRAP column half> 
-{{file:plot:CalibrationCurve.png?nolink}} 
-</WRAP> 
-</WRAP> 
- 
-==== Dose estimation ==== 
-<WRAP group> 
-<WRAP column half> 
-__Plot generation__\\ This plot will appear when the [[main:estimatedose | dose estimation]] process is complete.  
- 
-__Plot description__\\  
-  * **x-axis**\\ Radiation exposure in gray (Gy) 
-  * **y-axis**\\ Dicentric chromosomes per metaphase images 
-  * **dotted lines**\\ Each dotted line represents a DC frequency input in the Dose Calculator. 
- 
-Each DC frequency (dotted line) is colored differently. To determine which DC frequency a dotted line corresponds to, consult the output appearing in the [[main:console | console]].  
- 
-</WRAP> 
-<WRAP column half> 
-{{file:plot:DoseEstimation.png?nolink}} 
-</WRAP> 
-</WRAP> 
main/plots.1516985980.txt.gz · Last modified: 2018/01/26 16:59 by bshirley