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main:sample [2017/06/21 13:51] bshirley |
main:sample [2018/02/09 16:41] yli [View sample description and DC frequencies] |
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<WRAP group> | <WRAP group> | ||
<WRAP half column> | <WRAP half column> | ||
- | * **Specify a unique ID for the new sample**\\ A name for the sample to be created. This identifier will appear under “identity” within the list of samples in the [[main: | + | * **Specify a unique ID for the new sample**\\ A name for the sample to be created. This identifier will appear under “identity” within the list of samples in the [[main: |
+ | <WRAP round important> | ||
* **Directory metaphase images**\\ Cannot be modified. Displays the directory selected in the directory selection step. | * **Directory metaphase images**\\ Cannot be modified. Displays the directory selected in the directory selection step. | ||
- | * **Description of the sample (Optional)**\\ Description is optional and is not required to be formatted in any specific way. The content within the description of a sample is simply displayed when the sample is highlighted in the [[main: | + | * **Description of the sample (Optional)**\\ Description is optional and is not required to be formatted in any specific way. The content within the description of a sample is simply displayed when the sample is highlighted in the [[main: |
* **Number of metaphases**\\ Cannot be modified. Reports the number of TIFF image files found in the new sample directory. | * **Number of metaphases**\\ Cannot be modified. Reports the number of TIFF image files found in the new sample directory. | ||
* **List of metaphases in the sample**\\ Cannot be modified. A list of TIFF image files found in the new sample directory. | * **List of metaphases in the sample**\\ Cannot be modified. A list of TIFF image files found in the new sample directory. | ||
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In the event of an unexpected shutdown during sample processing, samples are of course not saved in the normal manner. However, some samples which completed processing before the shutdown may be [[main: | In the event of an unexpected shutdown during sample processing, samples are of course not saved in the normal manner. However, some samples which completed processing before the shutdown may be [[main: | ||
+ | |||
===== Edit sample description ===== | ===== Edit sample description ===== | ||
To edit the description of an existing sample, highlight the appropriate sample within the Sample list in the [[main: | To edit the description of an existing sample, highlight the appropriate sample within the Sample list in the [[main: | ||
+ | |||
+ | ===== Rename a sample ===== | ||
+ | Once a sample has been created its sample ID cannot be changed. This is because ADCI assumes sample IDs are unchanging and IDs are used to " | ||
+ | |||
+ | If a sample ID must be changed, you must create a new sample using the same images as the old sample, provide the desired sample ID during sample creation, and process the new sample. The content of the two ADCI samples should now be identical, however the newly created sample will have the desired ID. Please note, any previously generated reports containing the old sample will not be updated with the new sample ID. If this is an issue, we suggest providing the ID of the old sample within the description field of the new sample. In this manner, newly generated reports will display the description of the new sample, providing a method to locate the sample in older reports which contain the previous sample ID. | ||
===== Process a sample ===== | ===== Process a sample ===== | ||
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* **DC/Cell (All)**\\ Number of DCs in all metaphase images found in the " | * **DC/Cell (All)**\\ Number of DCs in all metaphase images found in the " | ||
* **DC/Cell (Range)**\\ Number of DCs in all metaphase images found in the " | * **DC/Cell (Range)**\\ Number of DCs in all metaphase images found in the " | ||
+ | |||
+ | =====Export DC results and filtering stats to a comma-separated file===== | ||
+ | Results of a processed samples can exported to a comma-separated-values(.csv) file to be analyzed in other tools. Simply highlight the sample and click the {{file: | ||
+ | \\ Only selected images will be included in the .csv file. Each row in the file represents an image. The file have 19 columns, which are image path, DC counts for sigma 0.8 to sigma 1.8, total object count, segmented object count, length-width ratio value, centromere density value, finite difference value, classified object count and classified object ratio. | ||
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