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main:sample [2018/01/26 16:21]
bshirley
main:sample [2018/02/09 16:41] (current)
yli [View sample description and DC frequencies]
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     * **DC/Cell (All)**\\ Number of DCs in all metaphase images found in the "​Metaphase Images Path" directory divided by the total number of images in the "​Metaphase Images Path".     * **DC/Cell (All)**\\ Number of DCs in all metaphase images found in the "​Metaphase Images Path" directory divided by the total number of images in the "​Metaphase Images Path".
     * **DC/Cell (Range)**\\ Number of DCs in all metaphase images found in the "​Metaphase Images Path" directory which have not been excluded by an [[main:​imageselectionmodel | image selection model]] or through manual exclusion in the [[main:​metaphaseimgviewer | metaphase image viewer]] divided by the total number of images which have not been excluded by an [[main:​imageselectionmodel | image selection model]] or through manual exclusion in the [[main:​metaphaseimgviewer | metaphase image viewer]].     * **DC/Cell (Range)**\\ Number of DCs in all metaphase images found in the "​Metaphase Images Path" directory which have not been excluded by an [[main:​imageselectionmodel | image selection model]] or through manual exclusion in the [[main:​metaphaseimgviewer | metaphase image viewer]] divided by the total number of images which have not been excluded by an [[main:​imageselectionmodel | image selection model]] or through manual exclusion in the [[main:​metaphaseimgviewer | metaphase image viewer]].
 +
 +=====Export DC results and filtering stats to a comma-separated file=====
 +Results of a processed samples can exported to a comma-separated-values(.csv) file to be analyzed in other tools. Simply highlight the sample and click the {{file:​icon:​mail_write.png?​nolink&​20}} icon.
 +\\ Only selected images will be included in the .csv file. Each row in the file represents an image. The file have 19 columns, which are image path, DC counts for sigma 0.8 to sigma 1.8, total object count, segmented object count, length-width ratio value, centromere density value, finite difference value, classified object count and classified object ratio.
  
main/sample.txt ยท Last modified: 2018/02/09 16:41 by yli