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start [2018/10/03 15:46] rlu45 |
start [2023/02/19 03:25] (current) bshirley |
If this is your first time using the software, the [[main:dongle | dongle]] and [[main:securitysplashscreen | splash screen]] pages will help get the software up and running. Next you may wish to consult the [[main:quickstart | quick start]] guide for a basic overview of the software and an example if its basic usage. The [[main:mainGUI | main GUI]] page provides and overview of the graphical user interface and can help you to locate the tools necessary to use the software. | If this is your first time using the software, the [[main:dongle | dongle]] and [[main:securitysplashscreen | splash screen]] pages will help get the software up and running. Next you may wish to consult the [[main:quickstart | quick start]] guide for a basic overview of the software and an example if its basic usage. The [[main:mainGUI | main GUI]] page provides and overview of the graphical user interface and can help you to locate the tools necessary to use the software. |
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===== Getting started ===== | ADCI Online is a cloud-based implementation of ADCI. Briefly, metaphase cell images to be analyzed are uploaded to cloud storage, then ADCI is executed remotely using a web browser. ADCI Online extends the capacity of a physical workstation with ADCI installed, and can fulfill "burst" requirements for analysis of large numbers of samples using parallelized cloud-based instances. See the heading "ADCI Online" below for additional details. As of ADCI version 1.13, cloud storage can be accessed directly through ADCI Desktop. |
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| ===== Peer-reviewed publications ===== |
| [[public:references | ADCI patents and full publication list]]\\ |
[[https://www.jove.com/video/56245/expedited-radiation-biodosimetry-automated-dicentric-chromosome | Video overview of ADCI published in the Journal of Visualized Experiments]]\\ | [[https://www.jove.com/video/56245/expedited-radiation-biodosimetry-automated-dicentric-chromosome | Video overview of ADCI published in the Journal of Visualized Experiments]]\\ |
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| ===== ADCI Online ===== |
| [[adcionline:overview | overview ]]\\ |
| [[adcionline:cloudstorage | interact with cloud storage using a web browser]]\\ |
| [[adcionline:cloudstoragedesktop | interact with cloud storage using ADCI (requires ADCI Desktop v1.13)]]\\ |
| [[adcionline:accesssystem | access ADCI_Online and begin streaming session]]\\ |
| [[adcionline:interacting | interact with ADCI_Online (recommendations and additional explanation)]] |
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| ===== ADCI ===== |
| ==== Getting started ==== |
[[main:demoversion | demonstration version]]\\ | [[main:demoversion | demonstration version]]\\ |
[[main:installation | installation]]\\ | [[main:installation | installation]]\\ |
[[main:plots | plots]] | [[main:plots | plots]] |
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===== Samples ===== | ==== Samples ==== |
[[main:sample | sample]]\\ | [[main:sample | sample]]\\ |
[[main:processedsample | processed sample]]\\ | [[main:processedsample | processed sample]]\\ |
[[main:qualitycontrol | quality control]]\\ | [[main:qualitycontrol | quality control]]\\ |
[[main:processtime | time required to process samples]]\\ | [[main:processtime | time required to process samples]]\\ |
[[main:samplepackunpack | transfer sample to another computer (pack/unpack sample)]] | [[main:samplepackunpack | transfer sample to another computer (pack/unpack sample)]]\\ |
| [[main:combinesamples | combine processed samples]] |
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===== Estimate dose ===== | ==== Estimate dose ==== |
[[main:curvecalibrationwizard | curve calibration wizard]]\\ | [[main:curvecalibrationwizard | curve calibration wizard]]\\ |
[[main:doseestimationwizard | dose estimation wizard]]\\ | [[main:doseestimationwizard | dose estimation wizard]]\\ |
[[main:calibrationcurve | calibration curve]]\\ | [[main:calibrationcurve | calibration curve]]\\ |
[[main:estimatedose | estimate dose]]\\ | [[main:estimatedose | estimate dose]]\\ |
| [[main:partialbodyestimatedose | partial-body dose estimation]]\\ |
[[http://adciwiki.cytognomix.com/files/resources/guide_to_manually_derived_calibration_curves.pdf | guide to create manually derived calibration curves (pdf)]] | [[http://adciwiki.cytognomix.com/files/resources/guide_to_manually_derived_calibration_curves.pdf | guide to create manually derived calibration curves (pdf)]] |
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===== Reports ===== | ==== Reports ==== |
[[main:report | report]]\\ | [[main:report | report]]\\ |
[[main:samplereport | sample report]]\\ | [[main:samplereport | sample report]]\\ |
[[main:optimalselectionsearchreport | optimal image selection model search report]] | [[main:optimalselectionsearchreport | optimal image selection model search report]] |
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===== Execution history ===== | ==== Execution history ==== |
[[main:logfile | log file]]\\ | [[main:logfile | log file]]\\ |
[[main:adcilogviewer | ADCI log file viewer]]\\ | [[main:adcilogviewer | ADCI log file viewer]]\\ |
===== Other ===== | ===== Other ===== |
[[http://adciwiki.cytognomix.com/files/resources/ADCI_ShortcutDocument.pdf | Shortcut Document - Overview of ADCI software icons and main concepts (pdf)]]\\ | [[http://adciwiki.cytognomix.com/files/resources/ADCI_ShortcutDocument.pdf | Shortcut Document - Overview of ADCI software icons and main concepts (pdf)]]\\ |
| [[main:settingsandprefs | settings and preferences]]\\ |
[[main:faqandtips | FAQ, useful tips and tricks]]\\ | [[main:faqandtips | FAQ, useful tips and tricks]]\\ |
[[main:references | ADCI and underlying algorithm references]]\\ | [[bgq:startpage | View ADCI-BGQ wiki pages (in progress)]]\\ |
[[main:abbreviations | abbreviations]]\\ | [[main:abbreviations | abbreviations]]\\ |
[[main:acknowledgements | acknowledgements]]\\ | [[main:acknowledgements | acknowledgements]]\\ |
[[main:contactus | contact us]] | [[public:contactus | contact us]]\\ |
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===== ADCI-BGQ (work in progress) ===== | |
[[main:bgqgetstarted | Get started]]\\ | |
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