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start [2018/10/29 19:36]
rlu45 [ADCI-BGQ (in progress)]
start [2023/02/19 03:25] (current)
bshirley
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 If this is your first time using the software, the [[main:dongle | dongle]] and [[main:securitysplashscreen | splash screen]] pages will help get the software up and running. Next you may wish to consult the [[main:quickstart | quick start]] guide for a basic overview of the software and an example if its basic usage. The [[main:mainGUI | main GUI]] page provides and overview of the graphical user interface and can help you to locate the tools necessary to use the software. If this is your first time using the software, the [[main:dongle | dongle]] and [[main:securitysplashscreen | splash screen]] pages will help get the software up and running. Next you may wish to consult the [[main:quickstart | quick start]] guide for a basic overview of the software and an example if its basic usage. The [[main:mainGUI | main GUI]] page provides and overview of the graphical user interface and can help you to locate the tools necessary to use the software.
  
-===== Getting started =====+ADCI Online is a cloud-based implementation of ADCI. Briefly, metaphase cell images to be analyzed are uploaded to cloud storage, then ADCI is executed remotely using a web browser. ADCI Online extends the capacity of a physical workstation with ADCI installed, and can fulfill "burst" requirements for analysis of large numbers of samples using parallelized cloud-based instances. See the heading "ADCI Online" below for additional details. As of ADCI version 1.13, cloud storage can be accessed directly through ADCI Desktop. 
 + 
 +===== Peer-reviewed publications ===== 
 +[[public:references | ADCI patents and full publication list]]\\ 
 [[https://www.jove.com/video/56245/expedited-radiation-biodosimetry-automated-dicentric-chromosome | Video overview of ADCI published in the Journal of Visualized Experiments]]\\  [[https://www.jove.com/video/56245/expedited-radiation-biodosimetry-automated-dicentric-chromosome | Video overview of ADCI published in the Journal of Visualized Experiments]]\\ 
 +
 +===== ADCI Online =====
 +[[adcionline:overview | overview ]]\\ 
 +[[adcionline:cloudstorage | interact with cloud storage using a web browser]]\\ 
 +[[adcionline:cloudstoragedesktop | interact with cloud storage using ADCI (requires ADCI Desktop v1.13)]]\\ 
 +[[adcionline:accesssystem | access ADCI_Online and begin streaming session]]\\ 
 +[[adcionline:interacting | interact with ADCI_Online (recommendations and additional explanation)]]
 +
 +===== ADCI =====
 +==== Getting started ====
 [[main:demoversion | demonstration version]]\\  [[main:demoversion | demonstration version]]\\ 
 [[main:installation | installation]]\\  [[main:installation | installation]]\\ 
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 [[main:plots | plots]] [[main:plots | plots]]
  
-===== Samples =====+==== Samples ====
 [[main:sample | sample]]\\  [[main:sample | sample]]\\ 
 [[main:processedsample | processed sample]]\\  [[main:processedsample | processed sample]]\\ 
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 [[main:qualitycontrol | quality control]]\\  [[main:qualitycontrol | quality control]]\\ 
 [[main:processtime | time required to process samples]]\\  [[main:processtime | time required to process samples]]\\ 
-[[main:samplepackunpack | transfer sample to another computer (pack/unpack sample)]]+[[main:samplepackunpack | transfer sample to another computer (pack/unpack sample)]]\\  
 +[[main:combinesamples | combine processed samples]]
  
-===== Estimate dose =====+==== Estimate dose ====
 [[main:curvecalibrationwizard | curve calibration wizard]]\\  [[main:curvecalibrationwizard | curve calibration wizard]]\\ 
 [[main:doseestimationwizard | dose estimation wizard]]\\  [[main:doseestimationwizard | dose estimation wizard]]\\ 
 [[main:calibrationcurve | calibration curve]]\\  [[main:calibrationcurve | calibration curve]]\\ 
 [[main:estimatedose | estimate dose]]\\  [[main:estimatedose | estimate dose]]\\ 
 +[[main:partialbodyestimatedose | partial-body dose estimation]]\\ 
 [[http://adciwiki.cytognomix.com/files/resources/guide_to_manually_derived_calibration_curves.pdf | guide to create manually derived calibration curves (pdf)]] [[http://adciwiki.cytognomix.com/files/resources/guide_to_manually_derived_calibration_curves.pdf | guide to create manually derived calibration curves (pdf)]]
  
-===== Reports =====+==== Reports ====
 [[main:report | report]]\\  [[main:report | report]]\\ 
 [[main:samplereport | sample report]]\\  [[main:samplereport | sample report]]\\ 
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 [[main:optimalselectionsearchreport | optimal image selection model search report]] [[main:optimalselectionsearchreport | optimal image selection model search report]]
  
-===== Execution history =====+==== Execution history ====
 [[main:logfile | log file]]\\  [[main:logfile | log file]]\\ 
 [[main:adcilogviewer | ADCI log file viewer]]\\  [[main:adcilogviewer | ADCI log file viewer]]\\ 
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 ===== Other ===== ===== Other =====
 [[http://adciwiki.cytognomix.com/files/resources/ADCI_ShortcutDocument.pdf | Shortcut Document - Overview of ADCI software icons and main concepts (pdf)]]\\  [[http://adciwiki.cytognomix.com/files/resources/ADCI_ShortcutDocument.pdf | Shortcut Document - Overview of ADCI software icons and main concepts (pdf)]]\\ 
 +[[main:settingsandprefs | settings and preferences]]\\ 
 [[main:faqandtips | FAQ, useful tips and tricks]]\\ [[main:faqandtips | FAQ, useful tips and tricks]]\\
-[[main:references | ADCI and underlying algorithm references]]\\ +[[bgq:startpage View ADCI-BGQ wiki pages (in progress)]]\\ 
 [[main:abbreviations | abbreviations]]\\  [[main:abbreviations | abbreviations]]\\ 
 [[main:acknowledgements | acknowledgements]]\\  [[main:acknowledgements | acknowledgements]]\\ 
-[[main:contactus | contact us]]+[[public:contactus | contact us]]\\  
  
-===== ADCI-BGQ (in progress) ===== 
-[[main:bgqgetstarted | Get started]]\\ 
-[[main:bgqworkflow | Overall workflow]]\\ 
-[[main:bgqmaingui | Main GUI]]\\ 
-[[main:bgqcreateasampleforaperson | Create a sample for a person]]\\ 
-[[main:bgqcreateasampleset | Create a sample set]]\\ 
start.1540841805.txt.gz · Last modified: 2018/10/29 19:36 by rlu45