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main:bgqprocessasampleset [2018/11/27 16:09] rlu45 |
main:bgqprocessasampleset [2019/01/09 21:05] rlu45 |
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First, you need to upload the calibration curves and image selection models that will be used for dose estimation on the sample set from your local computer to the server, which can be accomplished by the bottom area of the right panel. In the bottom area, the left tree shows the contents on the computer you are using; the right tree shows the contents in your BGQ account. In the left tree, locate and select the calibration curves and image selection models; in the right tree, select a destination directory to which the files will be uploaded, then click the middle ' | First, you need to upload the calibration curves and image selection models that will be used for dose estimation on the sample set from your local computer to the server, which can be accomplished by the bottom area of the right panel. In the bottom area, the left tree shows the contents on the computer you are using; the right tree shows the contents in your BGQ account. In the left tree, locate and select the calibration curves and image selection models; in the right tree, select a destination directory to which the files will be uploaded, then click the middle ' | ||
- | Then you need to set the value of the parameter ‘Number of blocks’, which is required by submission of one BGQ job. The recommended value is the prepopulated ' | + | <WRAP group> |
+ | <WRAP half column> | ||
+ | Then you need to set the value of the parameter ‘Number of blocks’, which is required by submission of one BGQ job. The recommended value is the prepopulated ' | ||
+ | |||
+ | The selected curve files will be filled into the drop-down list, and the image selection model associated with the curve currently being selected in the drop-down list will be displayed in the ‘Image selection model’ text field. Selection of another curve will result in an update of the ‘Image selection model’ text field. After initially uploading the curve and selection model files, presumably the curve file is incorrect in that the contained path to the associated image selection model is still for the local computer instead of the server. In this case, the software will immediately pop up a prompt dialog to tell you to correct the wrong curves; if you select a wrong curve file in the drop-down list, a similar information dialog will also appear and the background color of the ‘Image selection model’ text field will become red. Correcting the curve files can be accomplished using the ' | ||
+ | </ | ||
+ | <WRAP half column> | ||
+ | {{ file: | ||
+ | </ | ||
+ | </ | ||
- | Upon selection of a curve, the image selection model associated with the curve will be automatically displayed in the ‘Image selection model’ text field. You can also use the ‘Change’ button to change the model that is associated with the curve. Use the bottom area of the right panel to first upload the curves and models. | + | {{ file: |
===== Monitor progress ===== | ===== Monitor progress ===== | ||
- | After setting | + | After providing |
<WRAP group> | <WRAP group> | ||
<WRAP half column> | <WRAP half column> | ||
- | In this dialog, the top grouping box displays the detailed progress information for the particular job currently being selected in the drop-down list, with the progress bar graphically showing the percentage progress of this job. | + | In this monitoring |
- | * ‘Status’ label: the current status of the job, among three possible | + | * ‘Status’ label: the current status of the job, among three possible |
* ‘Elapsed time’ label: how long the job has been running for. | * ‘Elapsed time’ label: how long the job has been running for. | ||
* ‘Completed samples’ label: the number of completed samples in this job to date/the total number of samples in this job. | * ‘Completed samples’ label: the number of completed samples in this job to date/the total number of samples in this job. | ||
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</ | </ | ||
+ | ===== Download result matrices of samples in a processed sample set ===== | ||
+ | After finishing processing a sample set, you can download the result matrices of the contained samples to your local computer, then you can open them and perform further processing in the desktop ADCI software (e.g. estimating doses using additional calibration curves). To do this, first click the processed sample set in the scenario tree, then click the ' |