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-====== References ====== +===== Patents ===== 
-1. Subasinghe A, Samarabandu J, Knoll J, Khan W, Rogan PK. [[http://adcidewiki.cytognomix.com/files/pubs/Subasinghe_et_al_2010_IEEE_Int_Conf_on_Image_Processing.pdf | An Image Processing Algorithm for Accurate Extraction of the Centreline from Human Metaphase Chromosomes]]. 2010 IEEE International Conference on Image Processing, pp 3613–3616. DOI: 10.1109/ICIP.2010.5652017.+1. __Centromere detector and method for determining radiation exposure from chromosome abnormalities__ PCT/US11/59257 (WO2012061669A3). US Pat. App. Ser. No.13/822,289; U.S. Pat. No. [[https://patents.google.com/patent/US8605981B2/ | 8,605,981]]; Germany Pat. No. 11 2011103687.
  
-2. Subasinghe A, Samarabandu J, Knoll J, Khan W, Rogan PK. [[http://adcidewiki.cytognomix.com/files/pubs/Subasinghe_et_al_2010_Canadian_Conf_Computer_and_Robot_Vision.pdf | An Accurate Image Processing Algorithm for Detecting FISH Probe Locations Relative to Chromosome Landmarks on DAPI Stained Metaphase Chromosome Images]]. IEEE 2010 Canadian Conference on Computer and Robot Vision. 2010. Pp 223-230. DOI: 10.1109/CRV.2010.36.+2. __Smart Microscope system for Radiation Biodosimetry__. US Pat. App. Ser. No. 16/057,710. U.S. Pat. No. [[http://patft.uspto.gov/netacgi/nph-Parser?Sect1=PTO1&Sect2=HITOFF&d=PALL&p=1&u=%2Fnetahtml%2FPTO%2Fsrchnum.htm&r=1&f=G&l=50&s1=10929641.PN.&OS=PN/10929641&RS=PN/10929641 | 10,929,641]]; US Pat. App. Ser. No. 17/137,317, pending.
  
-3. Subasinghe A, Samarabandu J, Knoll J, Rogan PK.[[http://adcidewiki.cytognomix.com/files/pubs/cscbce2011_Centro_Refinement.pdf | Automated metaphase chromosome centromere refinement using fuzzy inference systems]]. 6th Canadian Student Conference on Biomedical Computing and Engineering, 2011. 
  
-4. Arachchige AS, Samarabandu J, Rogan PK, Knoll JHM. [[http://adcidewiki.cytognomix.com/files/pubs/Subasinghe_CCECE2010.pdf | Intensity integrated Laplacian algorithm for human metaphase chromosome centromere detection]]. 2012 25th IEEE Canadian Conference on Electrical & Computer Engineering. pp:1-4. DOI: 10.1109/CCECE.2012.6334866.+===== Peer-reviewed publications ===== 
 +1. Subasinghe A, Samarabandu J, Knoll J, Khan W, Rogan PK. [[http://adcidewiki.cytognomix.com/files/pubs/Subasinghe_et_al_2010_IEEE_Int_Conf_on_Image_Processing.pdf | An Image Processing Algorithm for Accurate Extraction of the Centreline from Human Metaphase Chromosomes]]. 2010 IEEE International Conference on Image Processing, pp 3613–3616. DOI: 10.1109/ICIP.2010.5652017. (2010)
  
-5. Li Y, A Wickramasinghe, A Subasinghe A, J Samarabandu, J Knoll, R Wilkins, F Flegal, and PK Rogan. [[http://adcidewiki.cytognomix.com/files/pubs/Li_ICIAfS2012.pdf | Towards Large Scale Automated Interpretation Of Cytogenetic Biodosimetry Data]]. Paper #1569626685. IEEE 6th Annual International conference on Automation for Sustainability, 2012. Pp. 30 - 35  DOI:  10.1109/ICIAFS.2012.6420039 +2. Subasinghe A, Samarabandu J, Knoll J, Khan W, Rogan PK. [[http://adcidewiki.cytognomix.com/files/pubs/Subasinghe_et_al_2010_Canadian_Conf_Computer_and_Robot_Vision.pdf | An Accurate Image Processing Algorithm for Detecting FISH Probe Locations Relative to Chromosome Landmarks on DAPI Stained Metaphase Chromosome Images]]. IEEE 2010 Canadian Conference on Computer and Robot Vision. 2010. Pp 223-230. DOI: 10.1109/CRV.2010.36. (2010)
  
-6. Ranjan R, Subasinghe A, Samarabandu J, Rogan PK, Knoll J. [[http://adcidewiki.cytognomix.com/files/pubs/Ranjan_ProcICompVision2012.pdf | Automatic Detection Of Pale Path And Overlaps In Chromosome Images Using Adaptive Search Technique And Re-Thresholding]]. Proceedings of International Conference on Computer Vision Theory and Applications, pp. 462-466, 2012, DOI: 10.5220/0003862604620466.+3. Subasinghe A, Samarabandu J, Knoll J, Rogan PK.[[http://adcidewiki.cytognomix.com/files/pubs/cscbce2011_Centro_Refinement.pdf | Automated metaphase chromosome centromere refinement using fuzzy inference systems]]. 6th Canadian Student Conference on Biomedical Computing and Engineering. (2011)
  
-7. Subasinghe A, Samarabandu J, Knoll J, Rogan PK. [[http://adcidewiki.cytognomix.com/files/pubs/SubasingheTBME2013.pdf | Intensity Integrated Laplacian Based Thickness Measurement for Detecting Human Metaphase Chromosome Centromere Location]]. IEEE Trans. Biomedical Engineering, 60:2005-13 DOI: 10.1109/TBME.2013.2248008, 2013.+4. Arachchige AS, Samarabandu J, Rogan PK, Knoll JHM. [[http://adcidewiki.cytognomix.com/files/pubs/Subasinghe_CCECE2010.pdf | Intensity integrated Laplacian algorithm for human metaphase chromosome centromere detection]]. 2012 25th IEEE Canadian Conference on Electrical & Computer Engineering. pp:1-4. DOI: 10.1109/CCECE.2012.6334866. (2012)
  
-8. Rogan PK, Y Li, A Wickramasinghe, A Subasinghe, N Caminsky, W Khan, J Samarabandu, R Wilkins, and F Flegal, JH. Knoll. [[http://adcidewiki.cytognomix.com/files/pubs/Radiat_Prot_Dosimetry-2014-Rogan-rpd-ncu133.pdf | Automating dicentric chromosome detection from cytogenetic biodosimetry data]]. Radiation Protection Biodosimetry, 159: 95-104, 2014 [PMID: 24757176].+5. Li Y, A Wickramasinghe, A Subasinghe A, J Samarabandu, J Knoll, R Wilkins, F Flegal, and PK Rogan. [[http://adcidewiki.cytognomix.com/files/pubs/Li_ICIAfS2012.pdf | Towards Large Scale Automated Interpretation Of Cytogenetic Biodosimetry Data]]. Paper #1569626685. IEEE 6th Annual International conference on Automation for Sustainability, 2012. Pp. 30-35  DOI: 10.1109/ICIAFS.2012.6420039. (2012)
  
-9. Rogan PK, Li Y, Wilkins R, Flegal FN, and Knoll JHM. [[http://adcidewiki.cytognomix.com/files/pubs/Radiat_Prot_Dosimetry-2016-Rogan-Advancedpubonline.pdf | Radiation Dose Estimation by Automated Cytogenetic Biodosimetry]]. Rad. Prot. Biodosimetry, 172(1-3):207- 217, 2016. DOI: 10.1093/rpd/ncw161.+6. Ranjan R, Subasinghe A, Samarabandu J, Rogan PK, Knoll J. [[http://adcidewiki.cytognomix.com/files/pubs/Ranjan_ProcICompVision2012.pdf | Automatic Detection Of Pale Path And Overlaps In Chromosome Images Using Adaptive Search Technique And Re-Thresholding]]. Proceedings of International Conference on Computer Vision Theory and Applications, pp. 462-466, 2012, DOI: 10.5220/0003862604620466. (2012)
  
-10. Subasinghe A, Samarabandu J, Li Y, Flegal F, Wilkins R, Knoll JHM and Rogan PK. [[http://adcidewiki.cytognomix.com/files/pubs/SubasingheF1000Res2016.pdf | Centromere Detection of Human Metaphase Chromosome Images using a Candidate Based Method]]. F1000Research, 5: 1565 doi: 10.12688/f1000research.9075.1, 2016 - Preprint at bioRxiv, doi: 10.1101/032110+7. Subasinghe A, Samarabandu J, Knoll J, Rogan PK. [[http://adcidewiki.cytognomix.com/files/pubs/SubasingheTBME2013.pdf | Intensity Integrated Laplacian Based Thickness Measurement for Detecting Human Metaphase Chromosome Centromere Location]]. IEEE Trans. Biomedical Engineering, 60:2005-13 DOI: 10.1109/TBME.2013.2248008. (2013)
  
-11. Shirley B, Li Y, Knoll JHM, and Rogan PK. [[http://adcidewiki.cytognomix.com/files/pubs/JOVE_Revisions_May5FINALwTablesFigures.pdf | Expedited radiation biodosimetry by automated dicentric chromosome identification and dose estimation]], Submitted to Journal of Visualized Experiments.+8. Rogan PK, Y Li, A Wickramasinghe, A Subasinghe, N Caminsky, W Khan, J Samarabandu, R Wilkins, and F Flegal, JH. Knoll. [[http://adcidewiki.cytognomix.com/files/pubs/Radiat_Prot_Dosimetry-2014-Rogan-rpd-ncu133.pdf | Automating dicentric chromosome detection from cytogenetic biodosimetry data]]. Radiation Protection Dosimetry, 159: 95-104 [PMID: 24757176]. (2014)
  
-12. Li Y, Knoll JHM, Wilkins RC, Flegal FN, and Rogan PK. [[http://adcidewiki.cytognomix.com/files/pubs/LI_et_al-2016-Microscopy_Research_and_TechniquePUBLISHED.pdf | Automated Discrimination of Dicentric and Monocentric Chromosomes by Machine Learning-Based Image Processing]]. Microsc Res Tech., 2016 May;79(5):393-402. doi: 10.1002/jemt.22642.+9. Rogan PK, Li Y, Wilkins R, Flegal FN, and Knoll JHM. [[http://adcidewiki.cytognomix.com/files/pubs/Radiat_Prot_Dosimetry-2016-Rogan-Advancedpubonline.pdf | Radiation Dose Estimation by Automated Cytogenetic Biodosimetry]]. Radiation Protection Dosimetry, 172(1-3):207- 217, 2016. DOI: 10.1093/rpd/ncw161. (2016) 
 + 
 +10. Subasinghe A, Samarabandu J, Li Y, Flegal F, Wilkins R, Knoll JHM and Rogan PK. [[http://adcidewiki.cytognomix.com/files/pubs/SubasingheF1000Res2016.pdf | Centromere Detection of Human Metaphase Chromosome Images using a Candidate Based Method]]. F1000Research, 5: 1565 doi: 10.12688/f1000research.9075.1, 2016 - Preprint at bioRxiv, doi: 10.1101/032110. (2016) 
 + 
 +11. Shirley, B., Li, Y., Knoll, J. H. M., Rogan, P. K. [[https://www.jove.com/video/56245/ | Expedited Radiation Biodosimetry by Automated Dicentric Chromosome Identification (ADCI) and Dose Estimation]]. J. Vis. Exp. (127), e56245, doi:10.3791/56245 (2017). 
 + 
 +12. Li Y, Knoll JHM, Wilkins RC, Flegal FN, and Rogan PK. [[http://adcidewiki.cytognomix.com/files/pubs/LI_et_al-2016-Microscopy_Research_and_TechniquePUBLISHED.pdf | Automated Discrimination of Dicentric and Monocentric Chromosomes by Machine Learning-Based Image Processing]]. Microsc Res Tech., 2016 May;79(5):393-402. doi: 10.1002/jemt.22642. (2016) 
 + 
 +13. Liu J, Li Y, Wilkins R, Flegal F, Knoll JHM, Rogan PK. [[https://f1000research.com/articles/6-1396/v1 | Accurate Cytogenetic Biodosimetry Through Automation Of Dicentric Chromosome Curation And Metaphase Cell Selection]]. F1000Research, 6: 1396 doi: 10.12688/f1000research.12226.1 (2017) 
 + 
 +14. Li Y, Shirley BC, Wilkins RC, Norton F, Knoll JHM, Rogan PK. [[http://adcidewiki.cytognomix.com/files/pubs/LiRPD2019.pdf | RADIATION DOSE ESTIMATION BY COMPLETELY AUTOMATED INTERPRETATION OF THE DICENTRIC CHROMOSOME ASSAY]]. Radiation Protection Dosimetry, ncy282. doi: 10.1093/rpd/ncy282 (2019) 
 + 
 +15. Rogan PK, Mucaki EJ, Lu R, Shirley BC, Waller E, Knoll JHM. [[https://doi.org/10.1371/journal.pone.0232008 | Meeting radiation dosimetry capacity requirements of population-scale exposures by geostatistical sampling]]. PLoS ONE 15(4): e0232008. doi: 10.1371/journal.pone.0232008 (2020) 
 + 
 + 
 +16. Shirley BC, Knoll JHM, Moquet J, Ainsbury E, Pham ND, Norton F, Wilkins RC, Rogan PK. [[http://adcidewiki.cytognomix.com/files/pubs/Estimating_partialbody_ionizing_radiation_exposure_by_automated_cytogenetic_biodosimetry.pdf | Estimating partial-body ionizing radiation exposure by automated cytogenetic biodosimetry]]. Int J Radiat Biol. 2020 Oct 6:1-12. doi: 10.1080/09553002.2020.1820611 (2020) 
 + 
 +17. Rogan PK, Mucaki EJ, Shirley BC, Li Y, Wilkins RC, Norton F, Sevriukova O, Pham N-D, Waller E, Knoll JHM. [[http://adcidewiki.cytognomix.com/files/pubs/RoganEtAl_Radiation2021.pdf | Automated Cytogenetic Biodosimetry at Population-Scale]]. Radiation. 2021; 1(2):79-94. doi: [[https://doi.org/10.3390/radiation1020008 | 10.3390/radiation1020008]] (2021)
  
-13. Liu J, Li Y, Wilkins R, Flegal F, Knoll JHM, Rogan PK. [[http://adcidewiki.cytognomix.com/files/pubs/ADCI_filters_manuscript_For_BioRxiv_4-21-2017_YLPKR_for_printingwithFigs.pdf | Accurate Cytogenetic Biodosimetry Through Automation Of Dicentric Chromosome Curation And Metaphase Cell Selection]]. bioRxiv 120410; doi: 10.1101/120410.​ 

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