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--- main:sample [2018/01/26 16:09]
bshirley
+++ main:sample [2018/02/09 16:41]
yli [View sample description and DC frequencies]
@@ Line 10: / Line 10: @@
 <WRAP round important>Please note the ID of a sample cannot be easily changed after it is created. If the sample ID must be modified, a "workaround" is described below under the heading "Rename a sample". </WRAP>
   * **Directory metaphase images**\\ Cannot be modified. Displays the directory selected in the directory selection step.
-  * **Description of the sample (Optional)**\\ Description is optional and is not required to be formatted in any specific way. The content within the description of a sample is simply displayed when the sample is highlighted in the [[main:maingui | main GUI]] and is not used in any calculation. Preset text within the description such as "Laboratory source", "Patient info", etc. may be filled in or removed entirely if desired. "Laboratory source" is prepopulated based on the content of [Settings (menu bar) → ADCI Preferences -> Laboratory Name]. "Sample import date" defaults to the current date.
+  * **Description of the sample (Optional)**\\ Description is optional and is not required to be formatted in any specific way. The content within the description of a sample is simply displayed when the sample is highlighted in the [[main:maingui | main GUI]] and is not used in any calculation. Preset text within the description such as "Laboratory source", "Patient info", etc. may be filled in or removed entirely if desired. "Laboratory source" is prepopulated based on the content of [Settings (menu bar) → ADCI Preferences -> Laboratory Name]. "Sample import date" defaults to the current date. If multiple samples derived from the same individual are present, it may be desirable to record the sample IDs of the other samples associated with the individual within the description of newly created samples.
   * **Number of metaphases**\\ Cannot be modified. Reports the number of TIFF image files found in the new sample directory.
   * **List of metaphases in the sample**\\ Cannot be modified. A list of TIFF image files found in the new sample directory.
@@ Line 61: / Line 61: @@
     * **DC/Cell (All)**\\ Number of DCs in all metaphase images found in the "Metaphase Images Path" directory divided by the total number of images in the "Metaphase Images Path".
     * **DC/Cell (Range)**\\ Number of DCs in all metaphase images found in the "Metaphase Images Path" directory which have not been excluded by an [[main:imageselectionmodel | image selection model]] or through manual exclusion in the [[main:metaphaseimgviewer | metaphase image viewer]] divided by the total number of images which have not been excluded by an [[main:imageselectionmodel | image selection model]] or through manual exclusion in the [[main:metaphaseimgviewer | metaphase image viewer]].
+=====Export DC results and filtering stats to a comma-separated file=====
+Results of a processed samples can exported to a comma-separated-values(.csv) file to be analyzed in other tools. Simply highlight the sample and click the {{file:icon:mail_write.png?nolink&20}} icon.
+\\ Only selected images will be included in the .csv file. Each row in the file represents an image. The file have 19 columns, which are image path, DC counts for sigma 0.8 to sigma 1.8, total object count, segmented object count, length-width ratio value, centromere density value, finite difference value, classified object count and classified object ratio.

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