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main:samplepackunpack [2017/08/25 19:06]
bshirley |
main:samplepackunpack [2017/08/25 19:57] (current)
yli [Pack (export) sample] |
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| ===== Sample components ===== | ===== Sample components ===== |
| * **Saved sample file**\\ This file is created when a sample is processed and has extension ".adcisample". By default it is found in the ADCI data directory specified during [[main:installation | installation]]. It contains - among other things - the status (other object, monocentric chromosome, dicentric chromosome) of all objects found within each image in the sample. This file is required when including the sample in [[main:calibrationcurve | calibration curve]] generation or [[main:estimatedose | dose estimation]]. This is the only sample component necessary to use ADCI if viewing images in the [[main:metaphaseimgviewer | metaphase image viewer]] is not required. | * **Saved sample file**\\ This file is created when a processed sample is saved and has extension ".adcisample". By default it is found in the ADCI data directory specified during [[main:installation | installation]]. It contains - among other things - the status (other object, monocentric chromosome, dicentric chromosome) of all objects found within each image in the sample. This file is required when including the sample in [[main:calibrationcurve | calibration curve]] generation or [[main:estimatedose | dose estimation]]. This is the only sample component necessary to use ADCI if viewing images in the [[main:metaphaseimgviewer | metaphase image viewer]] is not required. |
| * **Contour files**\\ A component of a [[main:processedsample | processed sample]] which are necessary to draw the colored outlines around chromosomes seen in the [[main:metaphaseimgviewer | metaphase image viewer]]. If contour files are not present, images will not appear in the metaphase image viewer. | * **Contour files**\\ A component of a [[main:processedsample | processed sample]] which are necessary to draw the colored outlines around chromosomes seen in the [[main:metaphaseimgviewer | metaphase image viewer]]. If contour files are not present, images will not appear in the metaphase image viewer. |
| * **Image files**\\ Images which were examined during sample processing. If image files are not present, images will not appear in the [[main:metaphaseimgviewer | metaphase image viewer]]. | * **Image files**\\ Images which were examined during sample processing. If image files are not present, images will not appear in the [[main:metaphaseimgviewer | metaphase image viewer]]. |
| * **Description**\\ Description of the sample as specified when the sample was created. The description can be modified at this time if desired. When the sample is packed, the description saved within the packed sample will consist of the content found in the description text box here. | * **Description**\\ Description of the sample as specified when the sample was created. The description can be modified at this time if desired. When the sample is packed, the description saved within the packed sample will consist of the content found in the description text box here. |
| * **Contour files status / Metaphase images status**\\ If ADCI cannot locate either of these sample components, the status of the missing component is "missing", otherwise it is "found". | * **Contour files status / Metaphase images status**\\ If ADCI cannot locate either of these sample components, the status of the missing component is "missing", otherwise it is "found". |
| * **Pack Sample As Folder**\\ Click "Specify Folder" to choose a file-system location where the packed sample will be saved. A new directory named "[ID of sample]pack" will be automatically created within the chosen directory to house the packed sample. | * **Pack Sample As Folder**\\ Click "Specify Folder" to choose a file-system location where the packed sample will be saved. A new directory named "[ID of sample]Pack" will be automatically created within the chosen directory to house the packed sample. |
| * **Pack Contour Files**\\ Specify whether to include contour files in the packed directory. Consult the "Sample components" heading above for more information on this sample component. Contour files are included by default. If the "Contour files status" is "missing", this option is disabled and contour files will not be included in the packed sample. | * **Pack Contour Files**\\ Specify whether to include contour files in the packed directory. Consult the "Sample components" heading above for more information on this sample component. Contour files are included by default. If the "Contour files status" is "missing", this option is disabled and contour files will not be included in the packed sample. |
| * **Pack Metaphase Image Files**\\ Specify whether to include metaphase image files in the packed directory. Consult the "Sample components" heading above for more information on this sample component. Metaphase image files are included by default. If the "Metaphase images status" is "missing", this option is disabled and metaphase image files will not be included in the packed sample. | * **Pack Metaphase Image Files**\\ Specify whether to include metaphase image files in the packed directory. Consult the "Sample components" heading above for more information on this sample component. Metaphase image files are included by default. If the "Metaphase images status" is "missing", this option is disabled and metaphase image files will not be included in the packed sample. |
