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====== Settings and Preferences ====== | ====== Settings and Preferences ====== | ||
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<WRAP group> | <WRAP group> | ||
<WRAP half column> | <WRAP half column> | ||
===== Settings Menu ===== | ===== Settings Menu ===== | ||
+ | Access settings dialogs for many aspects of ADCI in the settings menu, located at the top of the [[main: | ||
</ | </ | ||
<WRAP half column> | <WRAP half column> | ||
{{ file: | {{ file: | ||
+ | </ | ||
+ | </ | ||
+ | |||
+ | |||
+ | <WRAP group> | ||
+ | <WRAP half column> | ||
+ | ===== ADCI preferences ===== | ||
+ | |||
+ | </ | ||
+ | <WRAP half column> | ||
+ | {{ file: | ||
+ | </ | ||
+ | </ | ||
+ | |||
+ | |||
+ | <WRAP group> | ||
+ | <WRAP half column> | ||
+ | ===== False positive filters ===== | ||
+ | |||
+ | </ | ||
+ | <WRAP half column> | ||
+ | {{ file: | ||
+ | </ | ||
+ | </ | ||
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+ | |||
+ | <WRAP group> | ||
+ | <WRAP half column> | ||
+ | ===== Image selection model optimization ===== | ||
+ | |||
+ | </ | ||
+ | <WRAP half column> | ||
+ | {{ file: | ||
+ | </ | ||
+ | </ | ||
+ | |||
+ | |||
+ | <WRAP group> | ||
+ | ===== Partial-body===== | ||
+ | <WRAP half column> | ||
+ | * **Expected baseline DC frequency for an unirradiated sample**\\ Baseline DC frequency in unirradiated cells varies between studies, reported to range from 0.00009 to 0.00299 ((Romm H, Oestreicher U, Kulka U. Cytogenetic damage analysed by the dicentric assay. Annali Dell' | ||
+ | * **Dose at which 37% of irradiated cells survive**\\ Corresponds to the term // | ||
+ | * **Fraction of total images to place in each randomly generated sample**\\ Random subsets of images from an unirradiated sample are derived in order to determine an expected minimum number of DCs. A fraction of 0.5 means each randomly selected subset contains 50% of the images found in the original unirradiated sample. The default value for this parameter is 0.5.\\ | ||
+ | * **Minimum image count in randomly generated samples (overrides fraction)**\\ A minimum image count for each randomly generated subset. For example, if a 0Gy calibration sample contains 1000 images and a fraction of 0.4 is applied, 400 images will be present in each subset. Then, if the minimum image count specified here is higher than 400, the minimum image count will override the fraction and each randomly generated subset will contain the minimum image count. Additionally, | ||
+ | * **Number of randomly generated samples to create**\\ Count of randomly generated subsets to create. A higher number will increase dose estimation consistency but will require more computation time. The default value for this parameter is 500. | ||
+ | </ | ||
+ | <WRAP half column> | ||
+ | {{ file: | ||
+ | </ | ||
+ | </ | ||
+ | |||
+ | |||
+ | <WRAP group> | ||
+ | <WRAP half column> | ||
+ | ===== Quality Control ===== | ||
+ | |||
+ | </ | ||
+ | <WRAP half column> | ||
+ | {{ file: | ||
+ | </ | ||
+ | </ | ||
+ | |||
+ | |||
+ | <WRAP group> | ||
+ | <WRAP half column> | ||
+ | ===== Statistics ===== | ||
+ | |||
+ | </ | ||
+ | <WRAP half column> | ||
+ | {{ file: | ||
</ | </ | ||
</ | </ | ||