Table of Contents
ADCI wiki table of contents
Welcome to the Automated Dicentric Chromosome Identifier and Radiation Dose Estimator (ADCI) software wiki. To return to this table of contents at any time, click the Cytognomix logo or the text “ADCI” at the top of any wiki page. Also note you can return to previous pages you have visited by clicking a link in the “trace” section above. While viewing offline in PDF format, the document contains bookmarks allowing navigation.
If this is your first time using the software, the dongle and splash screen pages will help get the software up and running. Next you may wish to consult the quick start guide for a basic overview of the software and an example if its basic usage. The main GUI page provides and overview of the graphical user interface and can help you to locate the tools necessary to use the software.
ADCI Online is a cloud-based implementation of ADCI. Briefly, metaphase cell images to be analyzed are uploaded to cloud storage, then ADCI is executed remotely using a web browser. ADCI Online extends the capacity of a physical workstation with ADCI installed, and can fulfill “burst” requirements for analysis of large numbers of samples using parallelized cloud-based instances. See the heading “ADCI Online” below for additional details. As of ADCI version 1.13, cloud storage can be accessed directly through ADCI Desktop.
Peer-reviewed publications
ADCI patents and full publication list
Video overview of ADCI published in the Journal of Visualized Experiments
ADCI Online
overview
interact with cloud storage using a web browser
interact with cloud storage using ADCI (requires ADCI Desktop v1.13)
access ADCI_Online and begin streaming session
interact with ADCI_Online (recommendations and additional explanation)
ADCI
Getting started
Samples
sample
processed sample
image selection model
preset image selection models
automated search for optimal image selection models
process queue
process samples with GPU
metaphase image viewer
SVM sigma value
false positive filters
group bin method
quality control
time required to process samples
transfer sample to another computer (pack/unpack sample)
combine processed samples
Estimate dose
curve calibration wizard
dose estimation wizard
calibration curve
estimate dose
partial-body dose estimation
guide to create manually derived calibration curves (pdf)
Reports
report
sample report
calibration curve report
dose estimation report
provider report (dose estimation - csv format)
optimal image selection model search report
Execution history
log file
ADCI log file viewer
log viewer sidebar
viewer tab
search tab
integrity tab
sample recovery
Other
